easyLoad_broadPeak: easyLoad_broadPeak takes a character vector of file paths to...

In jrboyd/seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data

easyLoad_broadPeak takes a character vector of file paths to narrowPeak files from MACS2 and returns a named list of GRanges.

Description

easyLoad_broadPeak takes a character vector of file paths to narrowPeak files from MACS2 and returns a named list of GRanges.

Usage

easyLoad_broadPeak(
  file_paths,
  file_names = NULL,
  n_cores = getOption("mc.cores", 1)
)

Arguments

file_paths	character vector of paths to narrowPeak files. If named, those names will be used in output unless overriden by providing file_names.
file_names	character vector of names for output list. If not NULL will override any existing names for file_paths. Default is NULL.
n_cores	number of cores to use, uses mc.cores option if set or 1.

Value

a named list of GRanges loaded from file_paths

Examples

bp_f = system.file("extdata/test_loading.broadPeak",
    package = "seqsetvis", mustWork = TRUE)
easyLoad_broadPeak(bp_f, "my_broadPeak")

jrboyd/seqsetvis documentation built on Dec. 10, 2024, 11:23 a.m.