ssvFeatureBars: bar plots of set sizes

In jrboyd/seqsetvis: Set Based Visualizations for Next-Gen Sequencing Data

bar plots of set sizes

Description

bar plots of set sizes

Usage

ssvFeatureBars(
  object,
  show_counts = TRUE,
  bar_colors = NULL,
  counts_text_colors = NULL,
  return_data = FALSE,
  count_label_size = 8
)

Arguments

object	passed to ssvMakeMembTable for conversion to membership table
show_counts	logical. should counts be displayed at the center of each bar. default is TRUE
bar_colors	character. rcolor or hex colors. default of NULL uses RColorBrewer Dark2. Will repeat to match number of samples.
counts_text_colors	character. rcolor or hex colors. default of NULL uses RColorBrewer Dark2. Will repeat to match number of samples.
return_data	logical. If TRUE, return value is no longer ggplot and is instead the data used to generate that plot. Default is FALSE.
count_label_size	Font size bar count labels. Default is 8.

Value

ggplot of bar plot of set sizes

Examples

data(CTCF_in_10a_overlaps_gr)
ssvFeatureBars(list(1:3, 2:6))
ssvFeatureBars(CTCF_in_10a_overlaps_gr, count_label_size = 10)
ssvFeatureBars(S4Vectors::mcols(CTCF_in_10a_overlaps_gr)[,2:3])

jrboyd/seqsetvis documentation built on Sept. 15, 2024, 1:11 a.m.