API for jrboyd/ssvRecipes
Recipes using seqsetvis
| Global functions | |
|---|---|
| .get_files | Man page Source code |
| alignFasta | Man page Source code |
| annotate_gr | Man page |
| annotate_gr_clusters | Man page |
| bfcif | Man page Source code |
| cache_FUN | Man page Source code |
| cache_gz | Man page Source code |
| consensus_peaks | Source code |
| corr_fragLens | Man page |
| corr_fragLens.single | Man page Source code |
| counts_from_bams | Man page |
| fetch_bw_summary | Man page Source code |
| fix_xlsx_dates | Man page Source code |
| gene_name_hs2mm | Man page Source code |
| get_gg_xrange | Man page Source code Source code |
| get_gg_yrange | Man page Source code Source code |
| get_hclust_gls | Man page Source code |
| get_meta_dt | Man page Source code |
| get_my_files | Man page Source code |
| get_rna_dt | Man page Source code |
| ggdend | Source code |
| ggheatmap.dendro | Man page |
| gr_distance_overlap | Man page Source code |
| guess_lib | Source code |
| guess_lib_from_file | Man page Source code |
| h.cluster_data | Man page Source code |
| h.cluster_members | Man page Source code |
| h.final_plot | Man page Source code |
| h.plot_parts_grouped | Man page Source code |
| h.plot_parts_individual | Man page Source code |
| is_gz | Man page Source code |
| is_url | Man page Source code |
| kill_jids | Man page Source code |
| labels | Source code |
| load_ReadsPerGene.out.tab | Source code |
| load_matrix_from_ReadsPerGene.out.tab | Man page Source code |
| make_cell_dt_from_list | Man page Source code |
| make_msigdb_TERM2GENE | Man page |
| myFetchStrandedBam | Man page Source code |
| myPlotDiffClusters | Man page Source code |
| myStrandDiff | Man page Source code |
| my_clusterProfiler_GO | Man page |
| my_clusterProfiler_KEGG | Man page |
| my_clusterProfiler_MSigDB | Man page |
| my_clusterProfiler_table | Man page |
| parse_xls | Man page Source code |
| parse_xls_reads | Man page |
| plot,ssvH2,ANY-method | Man page |
| plot,ssvH2-method | Man page |
| plotHomerKnowResults | Man page |
| plot_bam_mismatch_dt | Man page |
| plot_hclust_heatmap | Man page Source code |
| plot_hclust_heatmap.assemble | Man page Source code |
| plot_scatter_side_density.assemble | Man page Man page Source code Source code |
| plot_scatter_side_density.xy | Man page Man page Source code Source code |
| r1_to_r2_FUN | Source code |
| read.table.fix_xlsx_dates | Man page Source code |
| reorderHeatmapClusters | Man page |
| rnaseq_asses_strandedness | Man page |
| running_jids | Man page Source code |
| salmon_index_transcriptome | Man page Source code |
| salmon_quant_fastq_PE | Source code |
| salmon_quant_fastq_SE | Source code |
| salmon_tx_quant | Man page Source code |
| sampleCap | Man page Source code |
| sc_fetch_pileup | Source code |
| show,ssvH2-method | Man page |
| ssvFetchBam.scRNA | Man page Source code |
| ssvFetchBamPE.RNA | Man page Source code |
| ssvH2 | Man page |
| ssvH2-class | Man page |
| ssvHeatmap2 | Man page Source code |
| ssvR_plot_bam_mismatch | Man page Source code |
| ssvR_plot_ideogogram | Man page Source code |
| ssvR_plot_ideogogram_data | Man page |
| star_align_fastq_PE | Man page |
| star_align_fastq_SE | Man page |
| star_align_fastq_core | Man page Source code |
| summary_FUN | Source code Source code |
| symbol2uniprot | Man page |
| sync_height | Man page Source code |
| sync_width | Man page Source code |
| timestamp.mdy | Man page Source code |
| track_assembly | Man page |
| track_chip | Man page Source code |
| track_ref | Man page Source code |
| track_rna | Man page Source code |
| truncate_peak_file | Man page Source code |
| wait_jids | Man page Source code |
| watch_jids | Man page Source code |
| windowize_peaks | Source code |
| writeBB | Source code |
| writeBigBed | Man page Source code |
| writeFastaFromGR | Man page Source code |
| writeFastaFromSeq | Man page Source code |
| write_geneList_matrix | Man page Source code |
