betabin_sim_helper: beta bin sim helper
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Arguments
Value
Description
Helper function to simulate beta binomial data. This takes in one loci.
the data frame should have 2 rows (one for each allele.)
Essentially this takes
the frequency of the variant allele, and bottleneck
size and simulates the found column.
Usage
1
betabin_sim_helper(data, Nb, threshold, acc)
Arguments
data
a data frame with with freq1 and pair_id columns and 2 rows
Nb
the bottleneck size
threshold
limit of variant calling detection
acc
a data frame with accuracy metrics
Value
data frame the same as data but with a simulated found column
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
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Description Usage Arguments Value
Description
Helper function to simulate beta binomial data. This takes in one loci. the data frame should have 2 rows (one for each allele.) Essentially this takes the frequency of the variant allele, and bottleneck size and simulates the found column.
Usage
1 | betabin_sim_helper(data, Nb, threshold, acc)
|
Arguments
data |
a data frame with with freq1 and pair_id columns and 2 rows |
Nb |
the bottleneck size |
threshold |
limit of variant calling detection |
acc |
a data frame with accuracy metrics |
Value
data frame the same as data but with a simulated found column
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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