Files in jtmccr1/HIVEr
Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/comparing_freqs.R R/data.R R/meta_munging.R R/mutational_model.R R/processing_snv.R R/transmission.R R/transmission_models.R R/zzz.R README.md data-raw/accuracy_stringent.R data-raw/small_community.comp.R data-raw/small_isnv.R data-raw/small_meta.R data-raw/small_trans.R data-raw/variants.R
data/accuracy_stringent.rda
data/small_community.comp.rda
data/small_isnv.rda
data/small_meta.rda
data/small_trans.rda
data/variants.rda
man/L.Nb.beta.Rd man/accuracy_stringent.Rd man/betabin_sim.Rd man/betabin_sim_helper.Rd man/com_sample_trans.Rd man/correct_id.Rd man/dist_prob.Rd man/dist_prob_wrapper.Rd man/dist_tp.Rd man/diverse_sites.Rd man/dzpois.Rd man/equal_compare.Rd man/finding_valid.Rd man/g_ft.Rd man/get_close.Rd man/get_double.Rd man/get_freqs.Rd man/getting_tp.Rd man/is_wholenumber.Rd man/longform_pairs.Rd man/math_fit.Rd man/model_summary.Rd man/monomorphic.Rd man/mut_model_LL.Rd man/not_detected.Rd man/only_one.Rd man/p0.Rd man/p_all.Rd man/pa_sim.Rd man/pa_sim_helper.Rd man/polish_freq.Rd man/quality.Rd man/read_rbind.Rd man/rzpois.Rd man/sample_trans.Rd man/short_pairs.Rd man/sift_dups.Rd man/simulations.Rd man/small_community.comp.Rd man/small_isnv.Rd man/small_meta.Rd man/small_trans.Rd man/split_path.Rd man/trans_fit.Rd man/variants.Rd tests/testthat.R tests/testthat/test-comparing_freqs.R tests/testthat/test-meta_munging.R tests/testthat/test-mutational_model.R tests/testthat/test-processing.R tests/testthat/test-transmission.R tests/testthat/test-transmissionmodels.R
jtmccr1/HIVEr documentation built on Aug. 5, 2018, 2:04 a.m.