small_community.comp: iSNV comparison between samples

Description Usage Format Source

Description

A silly example of what isnv comparisons between samples looks like. Note : this data began as real and then was expanded to inlcude cases that are useful in testing code chunks. It does not represent reality.

Usage

1

Format

a data frame with 32 rows and 13 variables

chr

Chromosome - genomic segment

pos

position on genomic segment

SPECID1

Specimen id for first sample

SPECID2

Specimen id for second sample

mutation

mutation as chr_refPosVar

ref

nucleotide in the plasmid control

var

nucleotide in the sample

season

The season of sampling

pcr_result

qpcr result for the samples-Strain

freq1

The frequency of the variant in the first sample

freq2

The frequency of the vairant in the second sample

pair_id

Id for the sample pairing

found

Is the variant found in the second sample

Source

data-raw/small_community.comp.R


jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.