quality: Identify quality variants
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Arguments
Examples
Description
This function takes in all variant calls associated with a specimen.
If the sample was sequenced in duplicate that must be apparent by a 'run' column
that specifies the unique names of the run columns. Samples with gc_ul above 1e5 don't
need to be run in duplicate. If the sample has a lower titer but was not sequenced twice this
function will through an error.
Usage
1
Arguments
df
a data frame containing all base calls associated with a specimen or isolate.
Examples
1
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
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Description Usage Arguments Examples
Description
This function takes in all variant calls associated with a specimen. If the sample was sequenced in duplicate that must be apparent by a 'run' column that specifies the unique names of the run columns. Samples with gc_ul above 1e5 don't need to be run in duplicate. If the sample has a lower titer but was not sequenced twice this function will through an error.
Usage
1 |
Arguments
df |
a data frame containing all base calls associated with a specimen or isolate. |
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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