only_one: Picking one sample per person
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Arguments
Value
Examples
Description
In the analysis it is sometimes useful to just have one sample per ENROLLID.
This is particularily true when we are simply interest in data specific to
the indivudal and not the sample. This function reduces a meta file that
may contain many SPECID/ENROLLID season pcr_result and reduces it so that just one SPECID
exists for each ENROLLID. We choose the best SPECID defined by
the sequenced sample
the sample that qualified for snv calling
the sample with highest titer.
If no samples were seqeunced we choose randomly.
Usage
1
only_one(meta_df)
Arguments
meta_df
A data frame containing one row for each SPECID in the data set.
Value
A data frame with one row for each ENROLLID in the data frame.
Examples
1
2
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
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Description Usage Arguments Value Examples
Description
In the analysis it is sometimes useful to just have one sample per ENROLLID. This is particularily true when we are simply interest in data specific to the indivudal and not the sample. This function reduces a meta file that may contain many SPECID/ENROLLID season pcr_result and reduces it so that just one SPECID exists for each ENROLLID. We choose the best SPECID defined by the sequenced sample the sample that qualified for snv calling the sample with highest titer. If no samples were seqeunced we choose randomly.
Usage
1 | only_one(meta_df)
|
Arguments
meta_df |
A data frame containing one row for each SPECID in the data set. |
Value
A data frame with one row for each ENROLLID in the data frame.
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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