Description Usage Arguments Value Examples
Simulate probability of transmission based on frequency
1 | simulations(data, runs, lambda, FUN, threshold = NULL, acc = NULL, ...)
|
data |
data frame of transmission data |
runs |
how many simulations to run |
lambda |
What is the lamda of the zero truncated Poisson to use |
FUN |
what function to use to simulate the found column pa_sim or betabin_sim unquoted |
threshold |
- optional to pass to betabinomial simulator |
acc |
optional to pass to betabinomial simulation |
... |
columns to group for simulations. These will get the same bottleneck size within each replication. It should probably only ever be pair_id.(ie each person gets the same bottleneck within a run) |
a data frame of simulated logit fits to frequency in donor vs. probability of transmission
1 2 | simulations(small_trans,10,3.2,pa_sim)
simulations(small_trans,10,3.2,betabin_sim,0.02,accuracy_stringent)
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