com_sample_trans: Randomly sample a transmission tibble based on a list of...
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Arguments
Value
Examples
Description
Each run we will ramdomly choose one of the possible transmission pairs
from data with a donor ENROLLID provided in the list and evalute the probability
of transmission. Smoothing every 2
Usage
1
com_sample_trans(data, runs, SPECIDs, test = F)
Arguments
data
data frame on which to sample. contains freq1 and freq2
runs
The number of times to sample
SPECIDs
A list of SPECIDs that can be used as donors
test
A boolean switch. If activatve returns a list of 2 tibbles. The first is
the last sample_data tibble the second is the normal output
Value
a data frame with columns freq1, trial, and probability of transmission.
Examples
1
2
print(small_community.comp)
com_sample_trans(small_community.comp,2,c("HS1595","MH0000"))
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
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Description Usage Arguments Value Examples
Description
Each run we will ramdomly choose one of the possible transmission pairs from data with a donor ENROLLID provided in the list and evalute the probability of transmission. Smoothing every 2
Usage
1 | com_sample_trans(data, runs, SPECIDs, test = F)
|
Arguments
data |
data frame on which to sample. contains freq1 and freq2 |
runs |
The number of times to sample |
SPECIDs |
A list of SPECIDs that can be used as donors |
test |
A boolean switch. If activatve returns a list of 2 tibbles. The first is the last sample_data tibble the second is the normal output |
Value
a data frame with columns freq1, trial, and probability of transmission.
Examples
1 2 | print(small_community.comp)
com_sample_trans(small_community.comp,2,c("HS1595","MH0000"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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