getting_tp: Finding transmission pairs
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Arguments
Value
Examples
Description
Here we take a data frame and look for all cases where two individuals are
sick within a week of each other. This does not compute wether or not the
pairs match our criteria yet
Usage
1
getting_tp(meta_one)
Arguments
meta_one
A data frame containing one row for each ENROLLID in the data set.
Value
A data frame with one row for each possible transmission pair
Examples
1
2
one_meta<-only_one(small_meta)
getting_tp(one_meta)
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Here we take a data frame and look for all cases where two individuals are sick within a week of each other. This does not compute wether or not the pairs match our criteria yet
Usage
1 | getting_tp(meta_one)
|
Arguments
meta_one |
A data frame containing one row for each ENROLLID in the data set. |
Value
A data frame with one row for each possible transmission pair
Examples
1 2 | one_meta<-only_one(small_meta)
getting_tp(one_meta)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.