small_isnv: iSNV present in samples
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Format
Source
Description
A small example of the data frames used to hold isnv calls.
Usage
1
Format
a data frame with 13 rows and 11 variables
#'
- HOUSE_ID
Id of the house of the individual
- ENROLLID
Id of individual enrolled in cohort
- SPECID
Specimen Id
- chr
Chromosome - genomic segment
- pos
position on genomic segment
- mutation
mutation as chr_refPosVar
- ref
nucleotide in the plasmid control
- freq.var
Frequency of the variant
- var
nucleotide in the sample
- season
The season of sampling
- pcr_result
qpcr result for the samples-Strain
Source
data-raw/small_isnv.R
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
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Description Usage Format Source
Description
A small example of the data frames used to hold isnv calls.
Usage
1 |
Format
a data frame with 13 rows and 11 variables #'
- HOUSE_ID
Id of the house of the individual
- ENROLLID
Id of individual enrolled in cohort
- SPECID
Specimen Id
- chr
Chromosome - genomic segment
- pos
position on genomic segment
- mutation
mutation as chr_refPosVar
- ref
nucleotide in the plasmid control
- freq.var
Frequency of the variant
- var
nucleotide in the sample
- season
The season of sampling
- pcr_result
qpcr result for the samples-Strain
Source
data-raw/small_isnv.R
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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