get_double: Get all ENROLLID that have two SPECID in a season with same...
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Arguments
Value
Examples
Description
This is useful to get the samples we have intrahost data for.
Usage
1
get_double(df, samples = 2)
Arguments
df
A data frame with at least ENROLLID, SPECID, season, and pcr_result. Each row is an isolate.
samples
The number of samples required to keep ENROLLID default = 2.
Value
the a data frame with only ENROLLID with multiple isolates - each row is an isolate
Examples
1
2
3
4
# There one shared iSNV here and one fixed difference the rest are the same.
print(small_meta)
get_double(small_meta)
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
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Description Usage Arguments Value Examples
Description
This is useful to get the samples we have intrahost data for.
Usage
1 | get_double(df, samples = 2)
|
Arguments
df |
A data frame with at least ENROLLID, SPECID, season, and pcr_result. Each row is an isolate. |
samples |
The number of samples required to keep ENROLLID default = 2. |
Value
the a data frame with only ENROLLID with multiple isolates - each row is an isolate
Examples
1 2 3 4 | # There one shared iSNV here and one fixed difference the rest are the same.
print(small_meta)
get_double(small_meta)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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