not_detected: Probability of not detecting a polymorphism This is the...
In jtmccr1/HIVEr: Analysis of transmission and intrahost iSNV data taken as part of the HIVE cohort
Description
Usage
Arguments
Value
Description
Probability of not detecting a polymorphism
This is the probability the site is less than 0.001 (assumed 0 in this model) or
not found by our sequencing method.
Usage
1
not_detected(mu, Ne, t, gc_ul, acc = accuracy_stringent)
Arguments
mu
The mutation rate per nucleotide per cellular infectious cycle
Ne
The effective population size
t
The number of generations
gc_ul
The sample titer
acc
dataframe holding the sensitivity
Value
The probability for the data given the parameters and the model
jtmccr1/HIVEr documentation built on May 29, 2019, 1:50 a.m.
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Description Usage Arguments Value
Description
Probability of not detecting a polymorphism This is the probability the site is less than 0.001 (assumed 0 in this model) or not found by our sequencing method.
Usage
1 | not_detected(mu, Ne, t, gc_ul, acc = accuracy_stringent)
|
Arguments
mu |
The mutation rate per nucleotide per cellular infectious cycle |
Ne |
The effective population size |
t |
The number of generations |
gc_ul |
The sample titer |
acc |
dataframe holding the sensitivity |
Value
The probability for the data given the parameters and the model
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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