API for keshav-motwani/scanalysis
Multi-Sample Visualization and Immune Repertoire Analysis Utilities for Single-Cell Data
| Global functions | |
|---|---|
| %>% | Man page |
| .encode_identity_frequency_matrix | Man page Source code |
| .filter_ambient_barcode_cellranger | Man page Source code |
| .filter_ambient_barcode_empty_drops | Man page Source code |
| .filter_ambient_barcode_inflection | Man page Source code |
| .filter_ambient_barcode_knee | Man page Source code |
| .get_cell_annotations | Man page Source code |
| .get_cell_features_assay | Man page Source code |
| .get_cell_features_assay_explicit_exp | Man page Source code |
| .get_cell_features_coldata | Man page Source code |
| .get_cell_features_reduced_dimensions | Man page Source code |
| .get_feature_annotations | Man page Source code |
| .get_reduced_dims | Man page |
| .prepare_barcode_counts | Man page Source code |
| .prepare_barcode_cutoffs | Man page Source code |
| .prepare_barcode_plot_data | Man page Source code |
| .prepare_gex_bivariate_counts | Man page Source code |
| .prepare_gex_data | Man page Source code |
| .prepare_gex_scale_limits | Man page Source code |
| .prepare_gex_univariate_counts | Man page Source code |
| .prepare_volcano_annotations | Man page Source code |
| .read_10x_gene_expr | Man page Source code |
| .read_10x_vdj | Man page Source code |
| .sce_to_assay | Man page Source code |
| .seurat_assay_to_sce | Man page Source code |
| annotate_ambient_profile | Man page Source code |
| annotate_cdr3 | Man page Source code |
| annotate_chain_count | Man page Source code |
| annotate_clonotype_count | Man page Source code |
| annotate_n_cells_expr | Man page Source code |
| annotate_n_genes_expr | Man page Source code |
| annotate_pct_gene_set | Man page Source code |
| annotate_pct_total_reads | Man page Source code |
| annotate_total_umi_count | Man page Source code |
| assign_clonotypes | Man page Source code |
| cache | Man page Source code |
| compute_evenness_profile | Source code |
| compute_evenness_profile_long | Man page Source code |
| compute_evenness_profile_matrix | Man page Source code |
| convert_identity_frequency_matrix_to_long | Man page Source code |
| encode_cell_identity_frequency_long | Man page Source code |
| encode_cell_identity_frequency_matrix | Man page Source code |
| encode_vdj_identity_frequency_long | Man page Source code |
| encode_vdj_identity_frequency_matrix | Man page Source code |
| filter_ambient_barcode | Man page Source code |
| filter_n_genes_expr | Man page Source code |
| filter_pct_mito | Man page Source code |
| filter_total_umi | Man page Source code |
| filter_vdj_chain_count | Man page Source code |
| get_assay_data | Man page Source code |
| get_cell_features | Man page Source code |
| get_multi_sample_pbmc_10k | Man page Source code |
| get_pbmc_5k_nextgem | Man page Source code |
| get_pbmc_5k_v3 | Man page Source code |
| get_row_data | Man page Source code |
| min_entropy | Source code |
| plot_barcode_qc | Man page Source code |
| plot_feature_distributions | Man page Source code |
| plot_feature_heatmap | Man page Source code |
| plot_features | Man page |
| plot_gex_bivariate_qc | Man page Source code |
| plot_gex_univariate_qc | Man page Source code |
| plot_pairwise_features | Man page Source code |
| plot_reduced_dimensions | Man page Source code |
| plot_vdj_gex_univariate_qc | Man page Source code |
| plot_volcano | Man page Source code |
| read_10x | Man page Source code |
| renyi_entropy | Source code |
| sce_to_seurat | Man page Source code |
| select_top_de_genes | Man page Source code |
| seurat_to_sce | Man page Source code |
| shannon_entropy | Source code |
| unnest_vdj | Man page Source code |
