plotTime: Plot time course data

In kevincjnixon/BinfTools: Useful functions for standard analyses

Plot time course data

Description

This function accepts a single gene or vector of multiple genes along with counts, conditions, and timepoints to plot the difference of gene expression between conditions over time.

Usage

plotTime(
  genes,
  counts,
  condition,
  timePoints,
  tOrd,
  title = "",
  cols = "Dark2",
  yax = "Expression",
  xax = "Time Point",
  eb = "se",
  showStat = T
)

Arguments

genes	character vector of at least one gene found in rownames(counts)
counts	data frame of gene expression where rows are genes and columns are samples
condition	character vector describing the condition of each sample in the same order of colnames(counts)
timePoints	character vector describing the time points of each sample in the same order of colnames(counts)
tOrd	character vector describing the order in which the timePoints should be plotted. Must be length of length(unique(timePoints))
title	character describing the title of the plot
cols	Character indicating the RColorBrewer palette name or list of colours (hex, name, rgb()) to be used. Default is "Dark2"
yax	character indicating how the y-axis should be labeled - note that error bar notation will be added automatically if applicable
xax	character indicating x-axis label
showStat	Boolean indicating if significance should be shown on the plot.

Value

plot showing expression changes over time

kevincjnixon/BinfTools documentation built on July 10, 2024, 11:46 a.m.