API for keyuan/ccube
ccube
| Global functions | |
|---|---|
| AnnotateCcubeResults | Man page Source code |
| AnnotateCcubeResults_sv | Man page Source code |
| Assign | Man page Source code |
| AssignWithCcube | Man page Source code |
| AssignWithCcube_sv | Man page Source code |
| CcubeCore | Man page Source code |
| CcubeSVCore | Man page Source code |
| CheckAndPrepareCcubeInupts | Source code |
| CheckAndPrepareCcubeInupts_sv | Source code |
| CombineSNVandSVResults | Man page Source code |
| CullEmptyClusters | Man page Source code |
| CullEmptyClusters_sv | Man page Source code |
| CullSmallClusters | Man page Source code |
| CullSmallClusters_sv | Man page Source code |
| ELBO_bv_g | Source code |
| GenerateCopyNumberProfile | Man page Source code |
| GenerateSubClonalCNProfile | Man page Source code |
| GetCcf | Man page Source code |
| GetCcf_sv | Man page Source code |
| GetPurity | Man page Source code |
| GetPurity_sv | Man page Source code |
| HasClonalCluster | Man page |
| HasEmptyCluster | Man page |
| MakeCcubeStdPlot | Man page Source code |
| MakeCcubeStdPlot_sv | Man page Source code |
| MapCcf2VafLinear | Man page |
| MapVaf2CcfLinear | Man page |
| MapVaf2CcfPyClone | Man page Source code |
| MergeClusters | Man page Source code |
| MergeClusters_sv | Man page Source code |
| ParseSnvCnaBattenberg | Man page Source code |
| ParseSnvCnaConsensus | Man page Source code |
| ParseSnvCnaOld | Man page |
| ParseSnvCnaPcawg11Format | Man page |
| ParseSnvCnaPreConsensus | Man page Source code |
| RemoveClusterAndReassignVariants | Man page Source code |
| RemoveClusterAndReassignVariantsWithEMsteps | Man page Source code |
| RemoveClusterAndReassignVariantsWithEMsteps_sv | Man page Source code |
| RemoveClusterAndReassignVariantsWithEstep | Man page Source code |
| RemoveClusterAndReassignVariantsWithEstep_sv | Man page Source code |
| RemoveClusterAndReassignVariants_sv | Man page Source code |
| RunCcubePipeline | Man page Source code |
| RunPostAssignPipeline | Man page Source code |
| SortClusters | Source code |
| VarationalExpectationStep | Source code |
| VarationalExpectationStep_smm | Source code |
| VarationalExpectationStep_sv | Source code |
| VariationalLowerBound | Source code |
| VariationalLowerBound_sv | Source code |
| VariationalMaximimizationStep | Source code |
| VariationalMaximimizationStep_smm | Source code |
| VariationalMaximimizationStep_sv | Source code |
| WritePcawgFormats | Man page Source code |
| WritePcawgFormats_sv | Man page Source code |
| bsxfun.se | Man page Source code |
| ccube_m6 | Man page Source code |
| cp2ap | Man page Source code |
| dot.ext | Source code |
| gg_color_hue | Man page Source code |
| initialization | Source code |
| initialization_gmm | Source code |
| initialization_smm | Source code |
| logChoose | Source code |
| logmvgamma | Source code |
| logsumexp | Man page Source code |
| my_repmat | Source code |
| neg_ELBO_bv | Source code |
| neg_ELBO_bv_g | Source code |
| neg_ELBO_ccf | Source code |
| neg_ELBO_ccf_g | Source code |
| python_false_true_converter | Source code |
| sort_components_gmm | Source code |
| sort_components_smm | Source code |
| variationalLowerBound_smm | Source code |
| vbgmm | Man page Source code |
| vbound | Source code |
| vbsmm | Man page Source code |
| vexp | Source code |
| vmax | Source code |
