AssignWithCcube: Computing responsibilities (assignment probabilities) with...

In keyuan/ccube: ccube

Computing responsibilities (assignment probabilities) with modified Ccube VBEM-step

Description

Computing responsibilities (assignment probabilities) with modified Ccube VBEM-step

Usage

AssignWithCcube(res, ssm, tol = 1e-08, maxiter = 100, epi = 0.001,
  verbose = F)

Arguments

res	A reference Ccube results list
ssm	A data frame of SNVs to be assigned. Ideally, the data has been processed by Ccube model. So it should have the ccube_mult column.
tol	convergence threshold
maxiter	maximum iterations, default number is 100.
epi	sequencing error, default is 1e-3
verbose	show VBEM progress

Value

a standard Ccube model with recomputed responsibilities and logResponsibilities

keyuan/ccube documentation built on Jan. 11, 2023, 12:01 a.m.