RemoveClusterAndReassignVariantsWithEMsteps: Remove a (or more) cluster and reassign its data if the...
In keyuan/ccube: ccube

RemoveClusterAndReassignVariantsWithEMsteps

R Documentation

Remove a (or more) cluster and reassign its data if the cluster is nonempty

Description

Remove a (or more) cluster and reassign its data if the cluster is nonempty

Usage

RemoveClusterAndReassignVariantsWithEMsteps(res, removeIdx, ssm = NULL,
  label = NULL, tol = 1e-08, maxiter = 100, epi = 0.001,
  verbose = F, fit_mult = T, fit_hyper = T)

Arguments

`res`	Ccube result list
`removeIdx`	clusters to remove
`ssm`	data
`label`	assigned labels if res doesn't have label variable
`tol`	stopping condition
`maxiter`	maximum iteration
`epi`	sequencing error
`verbose`	show progress
`fit_mult`	flag to estimate multiplicities
`fit_hyper`	flag to estimate hyperparameters