RemoveClusterAndReassignVariantsWithEMsteps: Remove a (or more) cluster and reassign its data if the...

Description Usage Arguments Value

Description

Remove a (or more) cluster and reassign its data if the cluster is nonempty

Usage

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RemoveClusterAndReassignVariantsWithEMsteps(res, removeIdx, ssm = NULL,
  label = NULL, tol = 1e-08, maxiter = 100, epi = 0.001,
  verbose = F, fit_mult = T, fit_hyper = T)

Arguments

res

Ccube result list

removeIdx

clusters to remove

ssm

data

label

assigned labels if res doesn't have label variable

tol

stopping condition

maxiter

maximum iteration

epi

sequencing error

verbose

show progress

fit_mult

flag to estimate multiplicities

fit_hyper

flag to estimate hyperparameters

Value

Ccube result list


keyuan/ccube documentation built on June 11, 2019, 8:38 p.m.