AssignWithCcube_sv: Computing responsibilities (assignment probabilities) with...

Description Usage Arguments Value

Description

Computing responsibilities (assignment probabilities) with modified Ccube_sv VBEM-step

Usage

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AssignWithCcube_sv(res, ssm, tol = 1e-08, maxiter = 100, epi = 0.001,
  verbose = F)

Arguments

res

A reference Ccube results list

ssm

A data frame of SVs to be assigned. Ideally, the data has been processed by CcubeSV model. So it should have ccube_mult1 and ccube_mult2 columns.

tol

convergence threshold

maxiter

maximum iterations, default number is 100.

epi

sequencing error, default is 1e-3

verbose

show VBEM progress

Value

a standard CcubeSV model with recomputed responsibilities and logResponsibilities


keyuan/ccube documentation built on July 5, 2019, 7:21 p.m.