MapVaf2CcfPyClone: Convert vaf to ccf using pyclone style mapping

In keyuan/ccube: ccube

Convert vaf to ccf using pyclone style mapping

Description

Convert vaf to ccf using pyclone style mapping

Usage

MapVaf2CcfPyClone(x, t, cn, cr, cv, bv, epi = 0.001, constraint = T,
  lower = -Inf, upper = Inf)

Arguments

x	vaf
t	purity
cn	normal total copy number
cr	total copy number in reference population
cv	total copy number in variant population
bv	mutation multplicity
epi	sequencing error
constraint	whether constriant the transformation
lower	lower bound of the constriant
upper	upper bound of the constriant

Value

ccf

keyuan/ccube documentation built on Jan. 11, 2023, 12:01 a.m.