MapVaf2CcfPyClone: Convert vaf to ccf using pyclone style mapping

Description Usage Arguments Value

Description

Convert vaf to ccf using pyclone style mapping

Usage

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MapVaf2CcfPyClone(x, t, cn, cr, cv, bv, epi = 0.001, constraint = T,
  lower = -Inf, upper = Inf)

Arguments

x

vaf

t

purity

cn

normal total copy number

cr

total copy number in reference population

cv

total copy number in variant population

bv

mutation multplicity

epi

sequencing error

constraint

whether constriant the transformation

lower

lower bound of the constriant

upper

upper bound of the constriant

Value

ccf


keyuan/ccube documentation built on June 11, 2019, 8:38 p.m.