WritePcawgFormats: Write files in PCAWG-11 formats, works for both CcubeCore and...
In keyuan/ccube: ccube

WritePcawgFormats

R Documentation

Write files in PCAWG-11 formats, works for both CcubeCore and ccube_m6 output

Description

Write files in PCAWG-11 formats, works for both CcubeCore and ccube_m6 output

Usage

WritePcawgFormats(ssm, res, resultFolder, sampleName, allFormats = F,
  basicFormats = T, outputMult = F, outputAssignProb = F,
  outputAssign = F, outputSubStruct = F, outputCcm = F,
  outputCcmIdx = F)

Arguments

`ssm`	data
`res`	Ccube result list
`resultFolder`	path to file
`sampleName`	sample name
`allFormats`	all PCAWG output formats
`basicFormats`	basic PCAWG output formats
`outputMult`	format for multiplicities
`outputAssignProb`	format for assignment probabilities
`outputAssign`	format for assignment
`outputSubStruct`	format for subclonal structure
`outputCcm`	format for co-clustering matrix
`outputCcmIdx`	format for variant indices in co-clustering matrix