WritePcawgFormats: Write files in PCAWG-11 formats, works for both CcubeCore and...

Description Usage Arguments

Description

Write files in PCAWG-11 formats, works for both CcubeCore and ccube_m6 output

Usage

1
2
3
4
WritePcawgFormats(ssm, res, resultFolder, sampleName, allFormats = F,
  basicFormats = T, outputMult = F, outputAssignProb = F,
  outputAssign = F, outputSubStruct = F, outputCcm = F,
  outputCcmIdx = F)

Arguments

ssm

data

res

Ccube result list

resultFolder

path to file

sampleName

sample name

allFormats

all PCAWG output formats

basicFormats

basic PCAWG output formats

outputMult

format for multiplicities

outputAssignProb

format for assignment probabilities

outputAssign

format for assignment

outputSubStruct

format for subclonal structure

outputCcm

format for co-clustering matrix

outputCcmIdx

format for variant indices in co-clustering matrix


keyuan/ccube documentation built on June 11, 2019, 8:38 p.m.