RunPostAssignPipeline: A pipeline to post assign events.
In keyuan/ccube: ccube
RunPostAssignPipeline R Documentation
A pipeline to post assign events.
Description
A pipeline to post assign events.
Usage
RunPostAssignPipeline(snvRes = NULL, svRes = NULL, mydata)
Arguments
snvRes
A reference Ccube SNV result list
svRes
A reference Ccube SV results list.
mydata
A data frame of variants (SNV or SV) to be assigned. Ideally, the data has been processed by CcubeSV or Ccube model. So it should have ccube_mult1/ccube_mult2 or ccube_mult columns.
Details
At least one of snvRes and svRes has to be provided. If the both lists are provided, they will be combined.
Value
A list containing, res, the post assigned result list and, ssm, the annotated data
keyuan/ccube documentation built on Jan. 11, 2023, 12:01 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| RunPostAssignPipeline | R Documentation |
A pipeline to post assign events.
Description
A pipeline to post assign events.
Usage
RunPostAssignPipeline(snvRes = NULL, svRes = NULL, mydata)
Arguments
snvRes |
A reference Ccube SNV result list |
svRes |
A reference Ccube SV results list. |
mydata |
A data frame of variants (SNV or SV) to be assigned. Ideally, the data has been processed by CcubeSV or Ccube model. So it should have ccube_mult1/ccube_mult2 or ccube_mult columns. |
Details
At least one of snvRes and svRes has to be provided. If the both lists are provided, they will be combined.
Value
A list containing, res, the post assigned result list and, ssm, the annotated data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.