CcubeCore: Run Ccube Core function

In keyuan/ccube: ccube

Run Ccube Core function

Description

Run Ccube Core function

Usage

CcubeCore(mydata, epi = 0.001, init = 2, prior, tol = 1e-20,
  maxiter = 1000, fit_mult = F, fit_hyper = T, use = c("use_base",
  "use_one"), verbose = FALSE)

Arguments

mydata	mutation data frame
epi	sequencing error
init	scalar number of clusters, or vector all possible cluster numbers
prior	prior parameters
tol	VBEM convergence threshold
maxiter	VBEM maximum iteration
fit_mult	whether or not to estimate multiplicities
fit_hyper	whether or not to estimat hyperparameters
use	methods to get rough estimates of ccf
verbose	show progress

Value

a list containing model parameters

keyuan/ccube documentation built on Jan. 11, 2023, 12:01 a.m.