GenerateSubClonalCNProfile: Simulate a 2-subclone subclonal copy number profile.

In keyuan/ccube: ccube

Simulate a 2-subclone subclonal copy number profile.

Description

Simulate a 2-subclone subclonal copy number profile.

Usage

GenerateSubClonalCNProfile(cnPoolMaj, cnPoolMin, cnPoolMajFractions,
  cnPoolMinFractions, numVariants, subclonal, ccfCN)

Arguments

cnPoolMaj	a pool of possible major copy numbers
cnPoolMin	a pool of possible minor copy numbers
cnPoolMajFractions	prevalence of possible major copy numbers
cnPoolMinFractions	prevalence of possible minor copy numbers
numVariants	number of variants
subclonal	a binary indicator of subclonal status, 1 for subclonal, 0 for clonal.
ccfCN	prevalence of the subclonal copy numbers

keyuan/ccube documentation built on Jan. 11, 2023, 12:01 a.m.