API for keyuan/ccube
ccube

Global functions
AnnotateCcubeResults Man page Source code
AnnotateCcubeResults_sv Man page Source code
Assign Man page Source code
AssignWithCcube Man page Source code
AssignWithCcube_sv Man page Source code
CcubeCore Man page Source code
CcubeSVCore Man page Source code
CheckAndPrepareCcubeInupts Source code
CheckAndPrepareCcubeInupts_sv Source code
CombineSNVandSVResults Man page Source code
CullEmptyClusters Man page Source code
CullEmptyClusters_sv Man page Source code
CullSmallClusters Man page Source code
CullSmallClusters_sv Man page Source code
ELBO_bv_g Source code
GenerateCopyNumberProfile Man page Source code
GenerateSubClonalCNProfile Man page Source code
GetCcf Man page Source code
GetCcf_sv Man page Source code
GetPurity Man page Source code
GetPurity_sv Man page Source code
HasClonalCluster Man page Source code
HasEmptyCluster Man page Source code
MakeCcubeStdPlot Man page Source code
MakeCcubeStdPlot_sv Man page Source code
MapVaf2CcfPyClone Man page Source code
MergeClusters Man page Source code
MergeClusters_sv Man page Source code
ParseSnvCnaBattenberg Man page Source code
ParseSnvCnaConsensus Man page Source code
ParseSnvCnaOld Man page Source code
ParseSnvCnaPcawg11Format Man page Source code
ParseSnvCnaPreConsensus Man page Source code
RemoveClusterAndReassignVariants Man page Source code
RemoveClusterAndReassignVariantsWithEMsteps Man page Source code
RemoveClusterAndReassignVariantsWithEMsteps_sv Man page Source code
RemoveClusterAndReassignVariantsWithEstep Man page Source code
RemoveClusterAndReassignVariantsWithEstep_sv Man page Source code
RemoveClusterAndReassignVariants_sv Man page Source code
RunCcubePipeline Man page Source code
RunPostAssignPipeline Man page Source code
SortClusters Source code
VarationalExpectationStep Source code
VarationalExpectationStep_smm Source code
VarationalExpectationStep_sv Source code
VariationalLowerBound Source code
VariationalLowerBound_sv Source code
VariationalMaximimizationStep Source code
VariationalMaximimizationStep_smm Source code
VariationalMaximimizationStep_sv Source code
WritePcawgFormats Man page Source code
WritePcawgFormats_sv Man page Source code
bsxfun.se Man page Source code
ccube_m6 Man page Source code
cp2ap Man page Source code
dot.ext Source code
gg_color_hue Man page Source code
initialization Source code
initialization_gmm Source code
initialization_smm Source code
logChoose Source code
logmvgamma Source code
logsumexp Man page Source code
my_repmat Source code
neg_ELBO_bv Source code
neg_ELBO_bv_g Source code
neg_ELBO_ccf Source code
neg_ELBO_ccf_g Source code
python_false_true_converter Source code
sort_components_gmm Source code
sort_components_smm Source code
variationalLowerBound_smm Source code
vbgmm Man page Source code
vbound Source code
vbsmm Man page Source code
vexp Source code
vmax Source code
keyuan/ccube documentation built on April 12, 2019, 11:03 p.m.