API for kimberlyroche/ROL
What the package does (short line)
| Global functions | |
|---|---|
| PER | Man page Source code |
| ROL | Man page |
| ROL-package | Man page |
| ROL_package | Man page |
| Riemann_dist_pair | Man page Source code |
| Riemann_dist_samples | Man page Source code |
| Riemann_dist_sets | Man page Source code |
| agglomerate_data | Man page Source code |
| assign_concise_taxonomy | Man page Source code |
| build_design_matrix | Man page Source code |
| build_design_matrix_predict | Man page Source code |
| calc_autocorrelation | Man page Source code |
| calc_microbe_universality_score | Man page Source code |
| calc_posterior_distance_row | Man page Source code |
| calc_posterior_distances | Man page Source code |
| calc_se_decay | Man page Source code |
| calc_universality_score | Man page Source code |
| calc_universality_score.old | Source code |
| calculate_emd | Man page Source code |
| check_output_dir | Man page Source code |
| convert_series_clr | Man page Source code |
| embed_posteriors | Man page Source code |
| filter_data | Man page Source code |
| filter_taxa_2D_summary | Man page Source code |
| fit_DLM | Man page Source code |
| fit_GP | Man page Source code |
| fit_model | Source code |
| fit_or_visualize_sub | Source code |
| fix_MAP_dims | Man page Source code |
| fold_error | Man page Source code |
| formalize_parameters | Man page Source code |
| generate_env_link | Man page Source code |
| generate_highcontrast_palette | Man page Source code |
| generate_innate_params | Man page Source code |
| generate_series | Man page Source code |
| get_Gamma | Man page Source code |
| get_Rdist_pair | Man page Source code |
| get_Xi | Man page Source code |
| get_all_vs_one_correlations | Man page Source code |
| get_deepest_assignment | Man page Source code |
| get_fitted_model_list | Man page Source code |
| get_other_labels | Man page Source code |
| get_pairwise_correlations | Man page Source code |
| get_pairwise_proportionalities | Man page Source code |
| get_taxonomy | Man page Source code |
| get_universal_interactions | Man page Source code |
| load_ABRP_2D_summary | Man page Source code |
| load_Caporaso_2D_summary | Man page Source code |
| load_DIABIMMUNE_2D_summary | Man page Source code |
| load_David_2D_summary | Man page Source code |
| load_DethlefsenRelman_2D_summary | Man page Source code |
| load_Grossart_2D_summary | Man page Source code |
| load_Johnson_2D_summary | Man page Source code |
| load_MAP_estimates | Man page Source code |
| load_McMahon_deep_2D_summary | Man page Source code |
| load_McMahon_shallow_2D_summary | Man page Source code |
| load_data | Man page Source code |
| load_full_posteriors | Man page Source code |
| load_outcomes | Man page Source code |
| log_rmse | Man page Source code |
| n_pairwise_combos | Man page Source code |
| parse_McMahon_metadata | Source code |
| parse_McMahon_sites | Source code |
| perform_cv | Man page Source code |
| plot_MAP_covariance | Man page Source code |
| plot_axes | Man page Source code |
| plot_bars | Man page Source code |
| plot_bounded_autocorrelation | Man page Source code |
| plot_gLV_bars | Man page Source code |
| plot_gLV_heatmap | Man page Source code |
| plot_gLV_hockeystick | Man page Source code |
| plot_gLV_lines | Man page Source code |
| plot_interaction_heatmap | Man page Source code |
| plot_mean_autocorrelation | Man page Source code |
| plot_ordination | Man page Source code |
| plot_posterior_predictive | Man page Source code |
| plot_timecourse | Man page Source code |
| rcppeigen_bothproducts | Man page |
| rcppeigen_hello_world | Man page |
| rcppeigen_innerproduct | Man page |
| rcppeigen_outerproduct | Man page |
| read_file | Man page Source code |
| simulate_scenario | Source code |
| summarize_all_pairs_2D | Man page Source code |
| summarize_pairs_2D | Man page Source code |
| visualize_fit | Source code |
