API for kimberlyroche/ROL
What the package does (short line)

Global functions
PER Man page Source code
ROL Man page
ROL-package Man page
ROL_package Man page
Riemann_dist_pair Man page Source code
Riemann_dist_samples Man page Source code
Riemann_dist_sets Man page Source code
agglomerate_data Man page Source code
assign_concise_taxonomy Man page Source code
build_design_matrix Man page Source code
build_design_matrix_predict Man page Source code
calc_autocorrelation Man page Source code
calc_microbe_universality_score Man page Source code
calc_posterior_distance_row Man page Source code
calc_posterior_distances Man page Source code
calc_se_decay Man page Source code
calc_universality_score Man page Source code
calc_universality_score.old Source code
calculate_emd Man page Source code
check_output_dir Man page Source code
convert_series_clr Man page Source code
embed_posteriors Man page Source code
filter_data Man page Source code
filter_taxa_2D_summary Man page Source code
fit_DLM Man page Source code
fit_GP Man page Source code
fit_model Source code
fit_or_visualize_sub Source code
fix_MAP_dims Man page Source code
fold_error Man page Source code
formalize_parameters Man page Source code
generate_env_link Man page Source code
generate_highcontrast_palette Man page Source code
generate_innate_params Man page Source code
generate_series Man page Source code
get_Gamma Man page Source code
get_Rdist_pair Man page Source code
get_Xi Man page Source code
get_all_vs_one_correlations Man page Source code
get_deepest_assignment Man page Source code
get_fitted_model_list Man page Source code
get_other_labels Man page Source code
get_pairwise_correlations Man page Source code
get_pairwise_proportionalities Man page Source code
get_taxonomy Man page Source code
get_universal_interactions Man page Source code
load_ABRP_2D_summary Man page Source code
load_Caporaso_2D_summary Man page Source code
load_DIABIMMUNE_2D_summary Man page Source code
load_David_2D_summary Man page Source code
load_DethlefsenRelman_2D_summary Man page Source code
load_Grossart_2D_summary Man page Source code
load_Johnson_2D_summary Man page Source code
load_MAP_estimates Man page Source code
load_McMahon_deep_2D_summary Man page Source code
load_McMahon_shallow_2D_summary Man page Source code
load_data Man page Source code
load_full_posteriors Man page Source code
load_outcomes Man page Source code
log_rmse Man page Source code
n_pairwise_combos Man page Source code
parse_McMahon_metadata Source code
parse_McMahon_sites Source code
perform_cv Man page Source code
plot_MAP_covariance Man page Source code
plot_axes Man page Source code
plot_bars Man page Source code
plot_bounded_autocorrelation Man page Source code
plot_gLV_bars Man page Source code
plot_gLV_heatmap Man page Source code
plot_gLV_hockeystick Man page Source code
plot_gLV_lines Man page Source code
plot_interaction_heatmap Man page Source code
plot_mean_autocorrelation Man page Source code
plot_ordination Man page Source code
plot_posterior_predictive Man page Source code
plot_timecourse Man page Source code
rcppeigen_bothproducts Man page
rcppeigen_hello_world Man page
rcppeigen_innerproduct Man page
rcppeigen_outerproduct Man page
read_file Man page Source code
simulate_scenario Source code
summarize_all_pairs_2D Man page Source code
summarize_pairs_2D Man page Source code
visualize_fit Source code
kimberlyroche/ROL documentation built on Dec. 10, 2020, 2:18 a.m.