Files in kimberlyroche/ROL

What the package does (short line)

R/ROL.R R/RcppExports.R R/contextualizing_distance.R R/data_parsing.R R/gLV_simulations.R R/model_fitting.R R/posterior_analyses.R R/universal_microbes.R R/visualization.R README.md exploratory/ACA_max_variance_plots.R exploratory/GP_covariates_sim.R exploratory/GP_detrending.R exploratory/JLM_talk_figures.R exploratory/Q1.R exploratory/Q2.R exploratory/R01.R exploratory/compare_cov-nocov_models.R exploratory/contextualizing_distance.R exploratory/covariate_fitting.R exploratory/dendrogram.R exploratory/detrended_visualization.R exploratory/eval_correlation_environmental_covariates.R exploratory/evaluate_DLM_correlators.R exploratory/labraduck_fit.R exploratory/metagenomics_label_group.R exploratory/pibble_covariates.R exploratory/prior_predictive.R exploratory/pull_metagenomics.R exploratory/quick_PERMANOVA.R exploratory/run_gLV.R exploratory/seasonality_score_simulation.R exploratory/sign_agreement.R exploratory/simulate_neutral_correlation.R exploratory/universality_extremes_ordination.R exploratory/universality_extremes_permutation.R exploratory/universality_score_heatmap.R exploratory/universality_scoring.R introduction.Rmd man/PER.Rd man/ROL-package.Rd man/ROL_package.Rd man/Riemann_dist_pair.Rd man/Riemann_dist_samples.Rd man/Riemann_dist_sets.Rd man/agglomerate_data.Rd man/assign_concise_taxonomy.Rd man/build_design_matrix.Rd man/build_design_matrix_predict.Rd man/calc_autocorrelation.Rd man/calc_microbe_universality_score.Rd man/calc_posterior_distance_row.Rd man/calc_posterior_distances.Rd man/calc_se_decay.Rd man/calc_universality_score.Rd man/calculate_emd.Rd man/check_output_dir.Rd man/convert_series_clr.Rd man/embed_posteriors.Rd man/filter_data.Rd man/filter_taxa_2D_summary.Rd man/fit_DLM.Rd man/fit_GP.Rd man/fix_MAP_dims.Rd man/fold_error.Rd man/formalize_parameters.Rd man/generate_env_link.Rd man/generate_highcontrast_palette.Rd man/generate_innate_params.Rd man/generate_series.Rd man/get_Gamma.Rd man/get_Rdist_pair.Rd man/get_Xi.Rd man/get_all_vs_one_correlations.Rd man/get_deepest_assignment.Rd man/get_fitted_model_list.Rd man/get_other_labels.Rd man/get_pairwise_correlations.Rd man/get_pairwise_proportionalities.Rd man/get_taxonomy.Rd man/get_universal_interactions.Rd man/load_ABRP_2D_summary.Rd man/load_Caporaso_2D_summary.Rd man/load_DIABIMMUNE_2D_summary.Rd man/load_David_2D_summary.Rd man/load_DethlefsenRelman_2D_summary.Rd man/load_Grossart_2D_summary.Rd man/load_Johnson_2D_summary.Rd man/load_MAP_estimates.Rd man/load_McMahon_deep_2D_summary.Rd man/load_McMahon_shallow_2D_summary.Rd man/load_data.Rd man/load_full_posteriors.Rd man/load_outcomes.Rd man/log_rmse.Rd man/n_pairwise_combos.Rd man/perform_cv.Rd man/plot_MAP_covariance.Rd man/plot_axes.Rd man/plot_bars.Rd man/plot_bounded_autocorrelation.Rd man/plot_gLV_bars.Rd man/plot_gLV_heatmap.Rd man/plot_gLV_hockeystick.Rd man/plot_gLV_lines.Rd man/plot_interaction_heatmap.Rd man/plot_mean_autocorrelation.Rd man/plot_ordination.Rd man/plot_posterior_predictive.Rd man/plot_timecourse.Rd man/rcppeigen_hello_world.Rd man/read_file.Rd man/summarize_all_pairs_2D.Rd man/summarize_pairs_2D.Rd sanity_check2.R scripts/cv.R scripts/embed_posteriors.R scripts/fit_model.R scripts/plot_cv.R scripts/reusable.R temp.R