simulate_sequence_counts: Simulate UMI count single-cell RNA-seq data

In kimberlyroche/codaDE: What the Package Does in One 'Title Case' Line

Simulate UMI count single-cell RNA-seq data

Description

Simulate UMI count single-cell RNA-seq data

Usage

simulate_sequence_counts(
  n = 20,
  p = 100,
  ref_data_name = "simulated",
  data_obj = NULL,
  replicate_noise = 0,
  proportion_da = 0.75
)

Arguments

n	number of samples per group
p	number of features (i.e. genes or bacterial taxa)
ref_data_name	optional name of reference data set to use from among "Morton", "Athanasiadou_ciona", "simulated"
data_obj	optional reference data set object; this takes precedence over ref_data_name
replicate_noise	optional deviation parameter associated with variation in replicate totals (a max of 1 is approx. an upper limit)
proportion_da	optional proportion of differentially abundant genes

Value

named list of true abundances, observed abundances, and group assignments

kimberlyroche/codaDE documentation built on May 11, 2022, 12:40 a.m.