AAMatrix-data: AAMatrix-data

In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

AAMatrix-data

Description

getAAMatrix() from the alakazam package.

Usage

data(AAMatrix)

Format

an object of class matrix

Value

score matrix

References

Gupta N, Vander Heiden J, Uduman M, Gadala-Maria D, Yaari G, Kleinstein S (2015) Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. Bioinformatics. 31(20), 3356-3358.

Examples

data("AAMatrix", package="MSA2dist")

kullrich/MSA2dist documentation built on April 26, 2024, 4:43 p.m.