aabin2aastring: aabin2aastring
In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
View source: R/aabin2aastring.R
aabin2aastring R Documentation
aabin2aastring
Description
This function converts an ape AAbin into
AAStringSet.
Usage
aabin2aastring(aabin)
Arguments
aabin
ape AAbin [mandatory]
Value
An object of class AAStringSet
Author(s)
Kristian K Ullrich
See Also
as.alignment
as.DNAbin.alignment
AAStringSet
Examples
data(woodmouse, package="ape")
## convert into AAStringSet
#aabin2aastring(ape::trans(woodmouse, 2))
ape::trans(woodmouse, 2) |> aabin2aastring()
kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.
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View source: R/aabin2aastring.R
| aabin2aastring | R Documentation |
aabin2aastring
Description
This function converts an ape AAbin into
AAStringSet.
Usage
aabin2aastring(aabin)
Arguments
aabin |
|
Value
An object of class AAStringSet
Author(s)
Kristian K Ullrich
See Also
as.alignment
as.DNAbin.alignment
AAStringSet
Examples
data(woodmouse, package="ape")
## convert into AAStringSet
#aabin2aastring(ape::trans(woodmouse, 2))
ape::trans(woodmouse, 2) |> aabin2aastring()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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