makePostalignedSeqs: makePostalignedSeqs
In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
makePostalignedSeqs R Documentation
makePostalignedSeqs
Description
This function is a fork from an internal function from
Biostrings
Usage
makePostalignedSeqs(x)
Arguments
x
x
Value
get internal function makePostalignedSeqs
Author(s)
Kristian K Ullrich
See Also
pairwiseAlignment,
cds2codonaln
Examples
## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATGCATTGC")
makePostalignedSeqs(pwalign::pairwiseAlignment(
cds2aa(Biostrings::DNAStringSet(cds1)),
cds2aa(Biostrings::DNAStringSet(cds2))))
kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.
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| makePostalignedSeqs | R Documentation |
makePostalignedSeqs
Description
This function is a fork from an internal function from
Biostrings
Usage
makePostalignedSeqs(x)
Arguments
x |
x |
Value
get internal function makePostalignedSeqs
Author(s)
Kristian K Ullrich
See Also
pairwiseAlignment,
cds2codonaln
Examples
## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATGCATTGC")
makePostalignedSeqs(pwalign::pairwiseAlignment(
cds2aa(Biostrings::DNAStringSet(cds1)),
cds2aa(Biostrings::DNAStringSet(cds2))))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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