getpos: getpos
In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
getpos R Documentation
getpos
Description
This function shows the position slot from a
DNAStringSet or an AAStringSet
metadata information.
Usage
getpos(seq)
Arguments
seq
DNAStringSet or AAStringSet [mandatory]
Value
GenomicRanges information from metadata
Author(s)
Kristian K Ullrich
See Also
addpop2string
Examples
## load example sequence data
data(iupac, package="MSA2dist")
## add position
iupac <- iupac |> addpos2string(chrom="chr1", start=1, end=1000)
#(iupac |> slot("metadata"))$GRanges
iupac |> getpos()
kullrich/MSA2dist documentation built on April 26, 2024, 4:43 p.m.
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| getpos | R Documentation |
getpos
Description
This function shows the position slot from a
DNAStringSet or an AAStringSet
metadata information.
Usage
getpos(seq)
Arguments
seq |
|
Value
GenomicRanges information from metadata
Author(s)
Kristian K Ullrich
See Also
addpop2string
Examples
## load example sequence data
data(iupac, package="MSA2dist")
## add position
iupac <- iupac |> addpos2string(chrom="chr1", start=1, end=1000)
#(iupac |> slot("metadata"))$GRanges
iupac |> getpos()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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