dnastring2dnabin: dnastring2dnabin
In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
View source: R/dnastring2dnabin.R
dnastring2dnabin R Documentation
dnastring2dnabin
Description
This function converts a DNAStringSet into an
ape DNAbin.
Usage
dnastring2dnabin(dna)
Arguments
dna
DNAStringSet [mandatory]
Value
An object of class DNAbin
Author(s)
Kristian K Ullrich
See Also
as.alignment
as.DNAbin.alignment
Examples
## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATG---CATTGC")
cds1.cds2.aln <- c(Biostrings::DNAStringSet(cds1),
Biostrings::DNAStringSet(cds2))
## convert into DNAbin
#dnastring2dnabin(cds1.cds2.aln)
cds1.cds2.aln |> dnastring2dnabin()
kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.
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View source: R/dnastring2dnabin.R
| dnastring2dnabin | R Documentation |
dnastring2dnabin
Description
This function converts a DNAStringSet into an
ape DNAbin.
Usage
dnastring2dnabin(dna)
Arguments
dna |
|
Value
An object of class DNAbin
Author(s)
Kristian K Ullrich
See Also
as.alignment
as.DNAbin.alignment
Examples
## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATG---CATTGC")
cds1.cds2.aln <- c(Biostrings::DNAStringSet(cds1),
Biostrings::DNAStringSet(cds2))
## convert into DNAbin
#dnastring2dnabin(cds1.cds2.aln)
cds1.cds2.aln |> dnastring2dnabin()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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