rcpp_pairwiseDeletionDNA: rcpp_pairwiseDeletionDNA

In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

rcpp_pairwiseDeletionDNA

Description

returns number of DNA sites used

Usage

rcpp_pairwiseDeletionDNA(dnavector, ncores = 1L, symmetric = 1L)

Arguments

dnavector	StringVector [mandatory]
ncores	number of cores [default: 1]
symmetric	symmetric score matrix [default: 1]

Value

list

Author(s)

Kristian K Ullrich

Examples

## load example sequence data
data("woodmouse", package="ape")
w <- woodmouse |> dnabin2dnastring() |> as.character()
rcpp_pairwiseDeletionDNA(dnavector=w, ncores=1)

kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.