region: region
In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
region R Documentation
region
Description
This function shows the region slot from a
DNAStringSet or an AAStringSet
metadata information.
Usage
region(seq)
Arguments
seq
DNAStringSet or AAStringSet [mandatory]
Value
region IRanges object from metadata
Author(s)
Kristian K Ullrich
See Also
addpop2string
Examples
## load example sequence data
data(iupac, package="MSA2dist")
iupac.aa <- iupac |> cds2aa(shorten = TRUE)
## create region
region1 <- IRanges::IRanges(start=c(1,41), end=c(20,50))
## add region
iupac.aa <- iupac.aa |> addregion2string(region=region1)
iupac.aa |> region()
kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.
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| region | R Documentation |
region
Description
This function shows the region slot from a
DNAStringSet or an AAStringSet
metadata information.
Usage
region(seq)
Arguments
seq |
|
Value
region IRanges object from metadata
Author(s)
Kristian K Ullrich
See Also
addpop2string
Examples
## load example sequence data
data(iupac, package="MSA2dist")
iupac.aa <- iupac |> cds2aa(shorten = TRUE)
## create region
region1 <- IRanges::IRanges(start=c(1,41), end=c(20,50))
## add region
iupac.aa <- iupac.aa |> addregion2string(region=region1)
iupac.aa |> region()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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