granthamMatrix: granthamMatrix
In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
View source: R/granthamMatrix.R
granthamMatrix R Documentation
granthamMatrix
Description
This function creates a granthamMatrix object to be used
with the rcpp_distSTRING function. By default,the grantham matrix is
defined as from Grantham 1974.
(see https://link.springer.com/article/10.1007/s00335-017-9704-9)
Usage
granthamMatrix()
Value
matrix
Author(s)
Kristian K Ullrich
References
Grantham R. (1974). Amino Acid Difference Formula
to Help Explain Protein Evolution. Science,185(4154),862-864.
See Also
aastring2dist,dist.dna
Examples
granthamMatrix()
kullrich/MSA2dist documentation built on April 26, 2024, 4:43 p.m.
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View source: R/granthamMatrix.R
| granthamMatrix | R Documentation |
granthamMatrix
Description
This function creates a granthamMatrix object to be used
with the rcpp_distSTRING function. By default,the grantham matrix is
defined as from Grantham 1974.
(see https://link.springer.com/article/10.1007/s00335-017-9704-9)
Usage
granthamMatrix()
Value
matrix
Author(s)
Kristian K Ullrich
References
Grantham R. (1974). Amino Acid Difference Formula to Help Explain Protein Evolution. Science,185(4154),862-864.
See Also
aastring2dist,dist.dna
Examples
granthamMatrix()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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