rcpp_pairwiseDeletionAA: rcpp_pairwiseDeletionAA

In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

rcpp_pairwiseDeletionAA

Description

returns number of AA sites used

Usage

rcpp_pairwiseDeletionAA(aavector, ncores = 1L, symmetric = 1L)

Arguments

aavector	StringVector [mandatory]
ncores	number of cores [default: 1]
symmetric	symmetric score matrix [default: 1]

Value

list

Author(s)

Kristian K Ullrich

Examples

## load example sequence data
data("hiv", package="MSA2dist")
h <- hiv |> cds2aa() |> as.character()
rcpp_pairwiseDeletionAA(aavector=h, ncores=1)

kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.