globalDeletion: globalDeletion
In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
View source: R/globalDeletion.R
globalDeletion R Documentation
globalDeletion
Description
This function returns a DNAStringSet reduced by all
sites containing any gaps ("-", "+", ".") or missing ("N") sites.
Usage
globalDeletion(dna)
Arguments
dna
DNAStringSet [mandatory]
Value
DNAStringSet
Author(s)
Kristian K Ullrich
Examples
## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATG---CATTGC")
cds1.cds2.aln <- c(Biostrings::DNAStringSet(cds1),
Biostrings::DNAStringSet(cds2))
globalDeletion(cds1.cds2.aln)
kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.
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View source: R/globalDeletion.R
| globalDeletion | R Documentation |
globalDeletion
Description
This function returns a DNAStringSet reduced by all
sites containing any gaps ("-", "+", ".") or missing ("N") sites.
Usage
globalDeletion(dna)
Arguments
dna |
|
Value
DNAStringSet
Author(s)
Kristian K Ullrich
Examples
## define two cds sequences
cds1 <- Biostrings::DNAString("ATGCAACATTGC")
cds2 <- Biostrings::DNAString("ATG---CATTGC")
cds1.cds2.aln <- c(Biostrings::DNAStringSet(cds1),
Biostrings::DNAStringSet(cds2))
globalDeletion(cds1.cds2.aln)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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