rcpp_distSTRING: rcpp_distSTRING

In kullrich/MSA2dist: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

rcpp_distSTRING

Description

calculates pairwise distances using a score matrix

Usage

rcpp_distSTRING(dnavector, scoreMatrix, ncores = 1L, symmetric = 1L)

Arguments

dnavector	StringVector [mandatory]
scoreMatrix	NumericMatrix [mandatory]
ncores	number of cores [default: 1]
symmetric	symmetric score matrix [default: 1]

Value

list

Author(s)

Kristian K Ullrich

Examples

## load example sequence data
data("hiv", package="MSA2dist")
rcpp_distSTRING(dnavector=as.character(hiv), scoreMatrix=iupacMatrix())

kullrich/MSA2dist documentation built on Nov. 14, 2024, 5:39 p.m.