Description Usage Arguments See Also Examples
Generate a QC report by comparing technical and biological features across multiple scRNA-seq datasets
1 2 3 4 5 6 7 | generateReport(
sces,
scesMerge,
outputFile = "report.html",
lineSize = 1,
pointSize = 0.8
)
|
sces |
a list of SingleCellExperiment Objects; each object containing quality meta data for one single cell RNAseq dataset (results from |
scesMerge |
a SingleCellExperiment object generated by combining and comparing multiple single cell RNAseq datasets (results from |
outputFile |
the name of the output file (default: report.html) |
lineSize |
float; the line size of figures in the generated report (default: 1) |
pointSize |
float; the point size of figures in the generated report (default: 0.8) |
Process_scRNAseq
Combine_scRNAseq
1 2 3 4 | library(scRNABatchQC)
sces<-Process_scRNAseq(inputs=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz","https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
scesMerge <- Combine_scRNAseq(sces)
generateReport(sces,scesMerge)
|
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