Description Usage Arguments Value See Also Examples
View source: R/plotFunctions.R
plot the genes highly associated with a certain principle component
1 | plotPCgenes(sces, margins = c(5, 5), keysize = 1, col = bluered(75), ...)
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sces |
list; a list of SingleCellExperiment objects; each object containing QC metadata for each dataset;(results from |
margins |
margins for heatmap.2 (default: c(5,5)) |
keysize |
integer for heatmap.2 (default: 1) |
col |
color for heatmap.2 (default: bluered(75)) |
... |
parameters passing to heatmap.2 |
a matrix containing the log2 fold change of genes highly associated with a certain principle component
1 2 3 | library(scRNABatchQC)
sces<-Process_scRNAseq(inputfiles=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz","https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
plotPCgenes(sces)
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