plotAveCountVSdetectRate: plotAveCountVSdetectRate

Description Usage Arguments See Also Examples

View source: R/plotFunctions.R

Description

plot the gene detection rates vs. the average gene expression level in the datasets

Usage

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plotAveCountVSdetectRate(sces, scolors = 1:length(sces), lineSize = 1)

Arguments

sces

list; a list of SingleCellExperiment objects; each object containing QC metadata for each dataset; (results from Process_scRNAseq )

scolors

a vector of integer; the color of each dataset (default: 1:length(sces))

lineSize

integer; the line size of the plot (default: 1)

See Also

Process_scRNAseq

Examples

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library(scRNABatchQC)
sces<-Process_scRNAseq(inputfiles=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
                                    "https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
  
#plot the gene detection rates for all datasets
plotAveCountVSdetectRate(sces)
#plot the gene detection rates for the first dataset
plotAveCountVSdetectRate(sces[1])

liuqivandy/scRNABatchQC documentation built on March 24, 2021, 11:01 p.m.