plotSampleSimilarity: plot the similarity across sample sets

In liuqivandy/scRNABatchQC: a package for quality control of multiple single cell RNAseq data

Description

plot the average expression similarity across single cell RNAseq datasets

Usage

plotSampleSimilarity(sces, ...)

Arguments

sces	list; a list of SingleCellExperiment objects; each object containing QC metadata for each dataset; (results from Process_scRNAseq )
...	parameters passing to function pairs

See Also

Process_scRNAseq

Examples

library(scRNABatchQC)
sces<-Process_scRNAseq(inputfiles=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
                                    "https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
  
plotSampleSimilarity(sces)

liuqivandy/scRNABatchQC documentation built on March 24, 2021, 11:01 p.m.