Description Usage Arguments Value See Also Examples
View source: R/plotFunctions.R
plot the pathways enriched in the highly variable genes across single cell RNAseq datasets
1 2 3 4 5 6 7 | plotHVGsPathways(
sces,
margins = c(5, 10),
keysize = 1,
col = colorpanel(75, low = "white", high = "red"),
...
)
|
sces |
list; a list of SingleCellExperiment objects; each object containing QC metadata for each dataset; (results from |
margins |
margins for heatmap.2 (default: c(5,10)) |
keysize |
integer for heatmap.2 (default: 1) |
col |
color for heatmap.2 (default: colorpanel(75,low="white",high="red")) |
... |
parameters passing to heatmap.2 |
a matrix containing the -log10 FDR of enriched pathways in each dataset
1 2 3 4 | library(scRNABatchQC)
sces<-Process_scRNAseq(inputfiles=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
"https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
plotHVGsPathways(sces)
|
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