plotAlltSNE: plot tSNE for the combined dataset
In liuqivandy/scRNABatchQC: a package for quality control of multiple single cell RNAseq data
Description
Usage
Arguments
Examples
View source: R/plotFunctions.R
Description
tSNE plot for the combined dataset
Usage
1
plotAlltSNE(scesMerge, scolors = NULL, pointSize = 0.8)
Arguments
scesMerge
SingleCellExperiment object; this object contains the combined data and reduced dimensions using PCA and tSNE;(results from Combine_scRNAseq)
scolors
a vector of color
pointSize
integer; size of point
Examples
1
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5
library(scRNABatchQC)
sces<-Process_scRNAseq(inputfile=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
"https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
scesMerge<-Combine_scRNAseq(sces)
plotAlltSNE(scesMerge)
liuqivandy/scRNABatchQC documentation built on March 24, 2021, 11:01 p.m.
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Description Usage Arguments Examples
View source: R/plotFunctions.R
Description
tSNE plot for the combined dataset
Usage
1 | plotAlltSNE(scesMerge, scolors = NULL, pointSize = 0.8)
|
Arguments
scesMerge |
SingleCellExperiment object; this object contains the combined data and reduced dimensions using PCA and tSNE;(results from |
scolors |
a vector of color |
pointSize |
integer; size of point |
Examples
1 2 3 4 5 | library(scRNABatchQC)
sces<-Process_scRNAseq(inputfile=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
"https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
scesMerge<-Combine_scRNAseq(sces)
plotAlltSNE(scesMerge)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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