plotHVGs: plot HVGs

Description Usage Arguments Value See Also Examples

View source: R/plotFunctions.R

Description

plot the highly variable genes across single cell RNAseq datasets

Usage

1
plotHVGs(sces, margins = c(5, 5), keysize = 1, col = bluered(75), ...)

Arguments

sces

list; a list of SingleCellExperiment objects; each object containing QC metadata for each dataset; (results from Process_scRNAseq )

margins

margins for heatmap.2 (default: c(5,5))

keysize

integer for heatmap.2 (default:1)

col

color for heatmap.2 (default: bluered(75))

...

parameters passing to heatmap.2

Value

a matrix containing the z-score of dispersion of highly variable genes in each dataset

See Also

Process_scRNAseq

Examples

1
2
3
4
library(scRNABatchQC)
sces<-Process_scRNAseq(inputfiles=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
                                    "https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
plotHVGs(sces)

liuqivandy/scRNABatchQC documentation built on March 24, 2021, 11:01 p.m.