plotHVGs: plot HVGs

In liuqivandy/scRNABatchQC: a package for quality control of multiple single cell RNAseq data

Description

plot the highly variable genes across single cell RNAseq datasets

Usage

plotHVGs(sces, margins = c(5, 5), keysize = 1, col = bluered(75), ...)

Arguments

sces	list; a list of SingleCellExperiment objects; each object containing QC metadata for each dataset; (results from Process_scRNAseq )
margins	margins for heatmap.2 (default: c(5,5))
keysize	integer for heatmap.2 (default:1)
col	color for heatmap.2 (default: bluered(75))
...	parameters passing to heatmap.2

Value

a matrix containing the z-score of dispersion of highly variable genes in each dataset

See Also

Process_scRNAseq

Examples

library(scRNABatchQC)
sces<-Process_scRNAseq(inputfiles=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
                                    "https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
plotHVGs(sces)

liuqivandy/scRNABatchQC documentation built on March 24, 2021, 11:01 p.m.