Description Usage Arguments See Also Examples
View source: R/plotFunctions.R
plot the gene count distribution of top n (default:500) highly expressed genes
1 2 3 4 5 6 | plotGeneCountDistribution(
sces,
scolors = 1:length(sces),
ngenes = 500,
lineSize = 1
)
|
sces |
list; a list of SingleCellExperiment objects; each object containing QC metadata for each dataset; (results from |
scolors |
a vector of integer; the color of each dataset (default: 1:length(sces)) |
ngenes |
integer; the number of highly expressed genes to plot the distribution (default:500) |
lineSize |
integer; the line size of the plot (default: 1) |
1 2 3 4 5 6 7 8 | library(scRNABatchQC)
sces<-Process_scRNAseq(inputfiles=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
"https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
#plot the average count distribution for all datasets
plotGeneCountDistribution(sces)
#plot the average count distribution for the first dataset
plotGeneCountDistribution(sces[1])
|
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