Description Usage Arguments Examples
View source: R/plotFunctions.R
PCA plot for the combined dataset
1 | plotAllPCA(scesMerge, scolors = NULL, pointSize = 0.8)
|
scesMerge |
SingleCellExperiment object; this object contains the combined data and reduced dimensions using PCA and tSNE; (results from |
scolors |
a vector of color |
pointSize |
integer; size of point |
1 2 3 4 5 | library(scRNABatchQC)
sces<-Process_scRNAseq(inputfile=c("https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar1.csv.gz",
"https://github.com/liuqivandy/scRNABatchQC/raw/master/bioplar5.csv.gz"))
scesMerge <- Combine_scRNAseq(sces)
plotAllPCA(scesMerge)
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