dist.JSD: Jensen-Shannon divergence (JSD) distance.

Description Usage Arguments See Also

View source: R/dist.JSD.R

Description

Jensen-Shannon divergence (JSD) distance used in gut microbiota clustering, source code from http://enterotype.embl.de/enterotypes.html

Usage

1
dist.JSD(inMatrix, pseudocount=0.000001, ...)

Arguments

inMatrix

input matrix of sample x taxon

pseudocount

avoid zero in computing

See Also

dist


lixiangchun/lxctk documentation built on May 21, 2019, 6:44 a.m.